The Oregon Hatchery Research Center News & Publications

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Annual Reports of the OHRC Board (pdfs)

• 2023 Annual Report
• 2022 Annual Report
• 2021 Annual Report
• 2020 Annual Report
• 2019 Annual Report
• 2018 Annual Report
• 2017 Annual Report
• 2016 Annual Report
• 2015 Annual Report
• 2014 Annual Report
• 2013 Annual Report

Scientific Journal Publications (linked references)

• Araki, H., Ardren, W.R., Olsen, E., Cooper, B. and Blouin, M.S., 2007. Reproductive success of captive‐bred steelhead trout in the wild: evaluation of three hatchery programs in the Hood River. Conservation Biology, 21(1), pp.181-190.
  
  
• Araki, H., Berejikian, B.A., Ford, M.J. and Blouin, M.S., 2008. Fitness of hatchery‐reared salmonids in the wild. Evolutionary Applications, 1(2), pp.342-35
  
  
• Araki, H., Cooper, B. and Blouin, M.S., 2009. Carry-over effect of captive breeding reduces reproductive fitness of wild-born descendants in the wild. Biology Letters, 5(5), pp.621-624.
  
  
• Auld, H.L., Jacobson, D.P., Rhodes, A.C. and Banks, M.A., 2021. Differences in mate pairings of hatchery-and natural-origin coho salmon inferred from offspring genotypes. Integrative Organismal Biology, 3(1), p.obab020.
  
  
• Auld, H.L., Noakes, D.L. and Banks, M.A., 2019. Advancing mate choice studies in salmonids. Reviews in Fish Biology and Fisheries, 29(2), pp.249-276.
• Christie, M.R., Ford, M.J. and Blouin, M.S., 2014. On the reproductive success of early‐generation hatchery fish in the wild. Evolutionary Applications, 7(8), pp.883-896.
  
  
• Christie, M.R., Marine, M.L., French, R.A. and Blouin, M.S., 2012. Genetic adaptation to captivity can occur in a single generation. Proceedings of the National Academy of Sciences, 109(1), pp.238-242.
  
  
• Church, M.R., Ebersole, J.L., Rensmeyer, K.M., Couture, R.B., Barrows, F.T. and Noakes, D.L., 2009. Mucus: a new tissue fraction for rapid determination of fish diet switching using stable isotope analysis. Canadian Journal of Fisheries and Aquatic Sciences, 66(1), pp.1-5.
  
  
• Cogliati, K. M., J. R. Unrein, W. M. Sealey, F. T. Barrows, O. Hakanson, R. Chitwood, D. L. G. Noakes, C. B. Schreck. 2019. Low-lipid diets fed at reduced ration: Effects on growth, body composition, and survival of juvenile Chinook salmon. Journal of Fish & Wildlife Management 10: 500-509
  
  
• Cogliati K.M., Herron C.L., Noakes D.L.G., Schreck C.B. 2019. Reduced stress response in juvenile Chinook Salmon reared with structure. Aquaculture 504:96-101.
  
  
• Cogliati, K.M., J. R. Unrein, H. A. Stewart, C. B. Schreck, D. L. G. Noakes. 2018. Egg size and emergence timing affect morphology and behavior in juvenile Chinook Salmon, Oncorhynchus tshawytscha. Ecology and Evolution 8(1): 778-789.
  
  
• Cogliati, K. M., Unrein, J.R., Schreck, C.B. and Noakes, D.L., 2019. Rearing environment affects spatial learning in juvenile Chinook salmon Oncorhynchus tshawytscha. Journal of Fish Biology 95: 870-880.
  
  
• Cole, K.S., Noakes, D.L., Thompson, N., Blouin, M., Morrison, B., Couture, R.B., O'Neil, J. and Schreck, C.B., 2021. Effects of temperature on sexual development in steelhead, Oncorhynchus mykiss. Environmental Biology of Fishes 104: 229-238
  
  
• Dittman, A.H., Pearsons, T.N., May, D., Couture, R.B. and Noakes, D.L., 2015. Imprinting of hatchery-reared salmon to targeted spawning locations: a new embryonic imprinting paradigm for hatchery programs. Fisheries, 40(3), pp.114-123.
  
  
• Evans, M.L., Johnson, M.A., Jacobson, D., Wang, J., Hogansen, M. and O'Malley, K.G., 2016. Evaluating a multi-generational reintroduction program for threatened salmon using genetic parentage analysis. Canadian Journal of Fisheries and Aquatic Sciences, 73(5), pp.844-852.
  
  
• Gao, Y. and Noakes, D.L., 2012. Chemical signatures of otoliths and application in fisheries. Environmental Biology of Fishes, 95(4), pp.415-418.
  Herron C.L., Cogliati K.M., Dolan B., Munakata A., Schreck CB. 2018. Stress up-regulates oxidative burst in juvenile Chinook salmon leukocytes. Fish & Shellfish Immunology 80:655-659.
  
  
• Jensen A., Schreck C.B., Hess J., North J., Bohn S., O'Malley K.G., Peterson J. 2020. Application of genetic stock identification and parentage‐based tagging in a mixed‐stock recreational Chinook salmon fishery. North American Journal of Fisheries Management 41(1): 130-141
  
  
• Johnson, M.A. and Friesen, T.A., 2013. Age at maturity, fork length, and sex ratio of upper Willamette River hatchery spring Chinook salmon. North American Journal of Fisheries Management, 33(2), pp.318-328.
  
  
• Johnson, M. A., Friesen, T. A., Van Doornik, D. M., Teel, D. J. and Myers, J. M. 2021. Genetic interactions among native and introduced stocks of Oncorhynchus mykiss in the upper Willamette River, Oregon. Conservation Genetics 22:111-124
  
  
• Johnson M.A., Noakes D.L.G., Friesen TA, Dittman AH, Couture RB, Schreck CB, Banner C, May D, Quinn TP.  2019. Growth, survivorship, and juvenile physiology of triploid steelhead (Oncorhynchus mykiss). Fisheries Research 220.
  
  
• Koeberle, A. L., I. Arismendi, W. Crittenden, D. Leer, D. L. G. Noakes. 2020. Fluctuating asymmetry of adult Chinook salmon (Oncorhynchus tshawytscha) otoliths from wild and hatchery origins. Aquatic Ecology 54:431-446.
  
  
• Munakata, A., E. Ogihara, C. B. Schreck, D. L. G. Noakes. 2017. Effects of short term acclimation in cool and warm water and influent water temperatures on temperature selection behavior in juvenile steelhead trout, Oncorhynchus mykiss. Aquaculture 467: 219 - 224.
  
  
• Naisbett-Jones, L. C., Putman, N. F., Scanlan, M. M., Noakes, D. L., & Lohmann, K. J. (2020). Magnetoreception in fishes: the effect of magnetic pulses on orientation of juvenile Pacific salmon. Journal of Experimental Biology, 223(10)
  
  
• Pollock, A. M., Kamran, M., Dittman, A. H., Johnson, M. A., & Noakes, D. L. 2020. Within-river straying: sex and size influence recovery location of hatchery Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences 77(2), 226-235
  
  
• Putman, N.F., M. M. Scanlan, A. M. Pollock, J. P. O'Neil, R. B. Couture, J. S. Stoner, T. P. Quinn, K. J. Lohmann, D. L. G. Noakes. 2018. Geomagnetic field influences upward movement of young Chinook salmon emerging from nests. Biology Letters 14(2): 20170752
  
  
• Putman, N.F., Scanlan, M.M., Billman, E.J., O'Neil, J.P., Couture, R.B., Quinn, T.P., Lohmann, K.J. and Noakes, D.L., 2014. An inherited magnetic map guides ocean navigation in juvenile Pacific salmon. Current Biology, 24(4), pp.446-450.
  
  
• Rand, P.S., Berejikian, B.A., Pearsons, T.N. and Noakes, D.L., 2012. Ecological interactions between wild and hatchery salmonids: an introduction to the special issue. Environmental Biology of Fishes, 94(1), pp.1-6.
  
  
• Sard, N. M., M. A. Johnson, D. P. Jacobson, M. J. Hogansen, K. G. O'Malley and M. A. Banks. 2016. Genetic monitoring guides adaptive management of a migratory fish reintroduction program. Animal Conservation 19(6): 570-577
  
  
• Sard, N. M., K. G. O'Malley, D. P. Jacobson, M. J. Hogansen, M. A. Johnson and M. A. Banks 2015. Factors influencing spawner success in a spring Chinook salmon (Oncorhynchus tshawytscha) reintroduction program. Canadian Journal of Fisheries and Aquatic Sciences 72:1390-1397
  
  
• Scanlan, M., N. F. Putman, A. M. Pollock, D. L. G. Noakes 2018. Magnetic map in nonanadromous Atlantic salmon. Proc. Nat. Acad. Sci. 115(43): 10995-10999
  
  
• Self, K. E., C. B. Schreck, K. M. Cogliati, E. J. Billman, D. L. G. Noakes. 2018. Egg size and growth in steelhead Oncorhynchus mykiss. Journal of Fish Biology 93(3): 465-468.
  
  
• Self, K. E., C. B. Schreck, K. M. Cogliati, E. J. Billman, D. L. G. Noakes. 2018. The effect of rearing structures on behaviour and movement of juvenile steelhead Oncorhynchus mykiss. Journal of Fish Biology 93(3): 449 – 454.
  
  
• Stewart, H.A., K. M. Cogliati, E. J. Billman, R. Chitwood, J. R. Unrein, D. L. G. Noakes, C. B. Schreck. 2017. Effects of transportation timing on osmoregulation and survival in yearling hatchery Chinook salmon (Oncorhynchus tshawytscha). Journal of Applied Aquaculture 29(3-4): 277-290.
  
  
• Thompson N.F., Blouin M.S.2016. Family dominance level measured during the fry stage weakly influences family length at smolting in hatchery reared steelhead (Oncorhynchus mykiss). Transactions of the American Fisheries Society 145: 1282-1289.
  
  
• Thompson, N.F., M.S. Blouin. 2015. The effects of high rearing density on the potential for domestication selection in hatchery culture of steelhead (Oncorhynchus mykiss).  Canadian Journal of Fisheries and Aquatic Sciences72:1-6.
  
  
• Thompson, N.F., B.Clemens, L.Ketchum, P.Simpson, R. Reagan, and M.S. Blouin. 2018. Family influence on length at release and size-biased survival post release in hatchery-reared steelhead: a mechanism to explain how domestication occurs. Aquaculture 491:135-146
  
  
• Unrein, J.R., E. J. Billman, K. M. Cogliati, R. Chitwood, D. L. G. Noakes, C. B. Schreck. 2018. Vertical self-sorting behavior in juvenile Chinook salmon (Oncorhynchus tshawytscha): evidence for family differences and variation in growth and morphology. Environmental Biology of Fishes, 101(2): 341-353.
  
  
• Whitmore, M., Richardson, S., Huff, A., Goodson, K., Quinn, T. P., Dittman, A. H., Johnson, M. A., Kamran, M., Noakes, D. L. G. 2021. Homeward bound: In-river movements of adult hatchery- and natural-origin Chinook Salmon in the Elk River, Oregon.  North American Journal of Fisheries Management 41: 1088-1096

Technical Reports (pdfs)

• Cole, K. S., Noakes, D. L. G., Thompson, N., Blouin, M., Morrison, B., Schreck, C. B. 2013.  Exposure to elevated temperature during early development affects sexual development in Oncorhynchus mykiss.  North Pacific Anadromous Fish Commission Technical Report No. 9: 101-103
  
  
• Griffiths R., Noakes D.L.G. 2021. Effect of eroded sediments from land-slip on the benthic macroinvertebrate community in Fall Creek.  Report to the OHRC Board. 10 pp.
  
  
• Johnson M.A., Friesen T.A., VanDoornik D.M., Teel D.J., Myers J.M.. 2018. Genetic influence from hatchery stocks on upper Willamette River steelhead Oncorhynchus mykiss. ODFW Information Report 2018-03, 20 pp.
  
  
• Johnson, M. A., Spangler, J. Jones, M., Couture, R. B., Noakes, L. G. 2020. Angler harvest of Alsea River hatchery winter steelhead: An evaluation of wild broodstock collection techniques.  ODFW Information Report no. 2020-05. 43 pp.
  
  
• O'Malley, K.G., Bohn, S., Whitman, L., Lewis, M. 2020. Genetic analysis of Chinook salmon in the Clackamas Basin, 2015-2018. Information Report 2020-04. Oregon Department of Fish and Wildlife, Salem. 20pp.
  
  
• O'Malley, K.G., Mazur, S., Green, L.J., Bohn, S., Wells, A. 2020. Evaluating the genetics of naturally produced Chinook salmon in the lower Rogue River fishery. Information Report 2020-02. Oregon Department of Fish and Wildlife, Salem. 11 pp.
  
  
• O'Malley, K.G., Van Dyke, D., Samarin, P.A., Bohn, S., Clements, S. 2020. An evaluation of "early" and "late" run alleles in Rogue River Chinook salmon (Oncorhynchus tshawytscha). Information Report 2020-06. Oregon Department of Fish and Wildlife, Salem. 24 pp.
  
  
• Putman, N. F., H. Ueda, D. L. G. Noakes. 2019. The current status of research on geomagnetic navigation in Pacific salmon. North Pacific Anadromous Fish Commission Technical Report 15: 1–5.
  

Graduate Research Theses and Dissertations (pdfs)

• Howell, M. Z. 2021. A Performance Evaluation of In-Stream Hatchboxes and Streamside Incubators for Chinook Salmon.
  
  
• Johnson, M. A. 2009. Patterns of natural selection and demography in coastal Oregon coho salmon (Oncorhynchus kisutch) populations : evidence from neutral and olfactory receptor gene-linked markers.
  
  
• Leblanc, C. A. 2011.  The importance of egg size for the diversity of salmonids.
  
  
• Lemanski, J. R. 2016.  Effects of Current Hatchery Practices on Salmon Odor Recognition and Responses.
  
  
• Pollock, A. M. M. 2019. Comparing Migratory Patterns and Survival Between Wild and Wild Fish Surrogate Juvenile Spring Chinook Salmon (Oncorhynchus tshawytscha)
  
  
• Scanlan, M. M. 2015. An Evaluation of the Effects of Hatchery and Management Practices on Geomagnetic Orientation Behavior in Juvenile Pacific Steelhead Trout (Oncorhynchus mykiss)
  
  
• Self, K. E. 2017. The Effects of Tank Structure and Egg Size on the Production of Wild Steelhead (Oncorhynchus mykiss) Surrogate Fish.
  
  
• Shemmel, E. M. 2009. Managing adult hatchery summer steelhead for a recreational fishery with reduced hatchery and wild interactions.
  
  
• Thompson, N. F. 2014. Rearing density as a driver of adaptation to captivity and traits under selection by domestication in hatchery reared steelhead (Oncorhynchus mykiss).